At the risk of stating the obvious, you do NOT want to sync the clocks in the capture to player. The whole point of this exercise is to see if timing of samples is changed. If DAC timing is locked to external source, then that can't happen (at least not fully).
Amir
I don’t understand.
A possible explanation for WAV / FLAC differences is that you feed the same bits to the DAC with differences in timing (jitter).
If you do an analog loopback (I assume the loopback on the Lynx is analog not digital) than one still capture differences in input jitter at the DAC.
What am I missing?