I don't want to dismiss the good questions others have asked about specifics of the sound, but honestly folks, this was a not a situation that the level of detail folks have asked for could be ascertained in a meaningful way. The systems just weren't set up to their best advantage to enable meaningful discrimination at that level. At least for me.
One thing I found amusing is the line of questioning about the brands of amps and cables used. I think we all agree these do indeed make a difference in systems of this caliber, but let's get real. Whereas amps and cable are basically ruler flat, by far and away the single most important variable that effects the listening experience is frequency response. With relatively significant deviations observed in both systems which show from far from ideal frequency responses, what is the point of bringing into the discussion, the relative merits of amplification or speaker wire? I will say however, that the McIntosh gear is not only fine gear (even the great HP thinks the 2301 is one of the great tube amps of our time), but can anybody argue that it isn't some of the most beautiful gear around and has been for several decades! Let me tell you, when you flip the input selector of the Mc preamp to phono, and the thick acrylic platter of the turntable suddenly lights up in sea foam green, if that doesn't make your heart do a little dance, then you are not an audiophile!
It does seem however that audiophiles are often distracted by small things that are not nearly as important as basic fundamentals such as frequency response. For me, I am comfortable talking about the relative impact and sonic merits of that stuff only after the fundamentals are in place and done correctly. Once we get the big stuff out of the way, I think its then fair to delve deeply in to the analytics that others have asked for. Until then, as in the systems here, there are far bigger fish to fry.
Marty